ext_localconf.php

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<?php
defined('TYPO3_MODE') or die();

if (TYPO3_MODE === 'BE') {
    // Setting up scripts that can be run from the cli_dispatch.phpsh script.
    $GLOBALS['TYPO3_CONF_VARS']['SC_OPTIONS']['GLOBAL']['cliKeys']['lowlevel_refindex'] = [
        function () {
            // Call the functionality
            if (in_array('-e', $_SERVER['argv']) || in_array('-c', $_SERVER['argv'])) {
                $testOnly = in_array('-c', $_SERVER['argv']);
                $refIndexObj = \TYPO3\CMS\Core\Utility\GeneralUtility::makeInstance(\TYPO3\CMS\Core\Database\ReferenceIndex::class);
                list($headerContent, $bodyContent) = $refIndexObj->updateIndex($testOnly, !in_array('-s', $_SERVER['argv']));
                $bodyContent = str_replace('##LF##', LF, $bodyContent);
            } else {
                echo '
            Options:
            -c = Check refindex
            -e = Update refindex
            -s = Silent
            ';
                die;
            }
        },
        '_CLI_lowlevel'
    ];
    $GLOBALS['TYPO3_CONF_VARS']['SC_OPTIONS']['GLOBAL']['cliKeys']['lowlevel_cleaner'] = [
        function () {
            $cleanerObj = \TYPO3\CMS\Core\Utility\GeneralUtility::makeInstance(\TYPO3\CMS\Lowlevel\CleanerCommand::class);
            $cleanerObj->cli_main($_SERVER['argv']);
        },
        '_CLI_lowlevel'
    ];
    $GLOBALS['TYPO3_CONF_VARS']['SC_OPTIONS']['GLOBAL']['cliKeys']['lowlevel_admin'] = [
        function () {
            $adminObj = \TYPO3\CMS\Core\Utility\GeneralUtility::makeInstance(\TYPO3\CMS\Lowlevel\AdminCommand::class);
            $adminObj->cli_main($_SERVER['argv']);
        },
        '_CLI_lowlevel'
    ];
    $GLOBALS['TYPO3_CONF_VARS']['EXTCONF']['lowlevel']['cleanerModules']['missing_files'] = [\TYPO3\CMS\Lowlevel\MissingFilesCommand::class];
    $GLOBALS['TYPO3_CONF_VARS']['EXTCONF']['lowlevel']['cleanerModules']['missing_relations'] = [\TYPO3\CMS\Lowlevel\MissingRelationsCommand::class];
    $GLOBALS['TYPO3_CONF_VARS']['EXTCONF']['lowlevel']['cleanerModules']['double_files'] = [\TYPO3\CMS\Lowlevel\DoubleFilesCommand::class];
    $GLOBALS['TYPO3_CONF_VARS']['EXTCONF']['lowlevel']['cleanerModules']['rte_images'] = [\TYPO3\CMS\Lowlevel\RteImagesCommand::class];
    $GLOBALS['TYPO3_CONF_VARS']['EXTCONF']['lowlevel']['cleanerModules']['lost_files'] = [\TYPO3\CMS\Lowlevel\LostFilesCommand::class];
    $GLOBALS['TYPO3_CONF_VARS']['EXTCONF']['lowlevel']['cleanerModules']['orphan_records'] = [\TYPO3\CMS\Lowlevel\OrphanRecordsCommand::class];
    $GLOBALS['TYPO3_CONF_VARS']['EXTCONF']['lowlevel']['cleanerModules']['deleted'] = [\TYPO3\CMS\Lowlevel\DeletedRecordsCommand::class];
    $GLOBALS['TYPO3_CONF_VARS']['EXTCONF']['lowlevel']['cleanerModules']['versions'] = [\TYPO3\CMS\Lowlevel\VersionsCommand::class];
    $GLOBALS['TYPO3_CONF_VARS']['EXTCONF']['lowlevel']['cleanerModules']['cleanflexform'] = [\TYPO3\CMS\Lowlevel\CleanFlexformCommand::class];
    $GLOBALS['TYPO3_CONF_VARS']['EXTCONF']['lowlevel']['cleanerModules']['syslog'] = [\TYPO3\CMS\Lowlevel\SyslogCommand::class];
}